STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0227Transmembrane family protein. (97 aa)    
Predicted Functional Partners:
B005_0881
NADPH-dependent FMN reductase family protein.
  
     0.577
B005_3292
Hypothetical protein.
  
     0.574
B005_1064
Putative sigma E regulatory protein, MucB/RseB.
  
     0.532
B005_1119
Hypothetical protein.
  
     0.511
B005_2562
Hypothetical protein.
  
     0.500
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
     0.487
thrS
threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.472
B005_0944
Hypothetical protein.
 
 
   0.468
B005_3046
Cellulose binding domain protein.
  
     0.446
B005_1110
acyl-CoA carboxylase epsilon subunit.
  
     0.439
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.