STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0258Periplasmic sugar-binding domain protein; Belongs to the binding-protein-dependent transport system permease family. (645 aa)    
Predicted Functional Partners:
rbsA
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
B005_1211
ABC transporter family protein.
 0.997
B005_1213
Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
0.971
B005_1212
Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
0.969
B005_1214
Periplasmic binding domain protein.
 
0.967
B005_0256
Periplasmic binding s and sugar binding domain of LacI family protein.
 
  
0.898
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.832
B005_3318
Response regulator.
 
 
 0.772
B005_2270
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.717
B005_0192
ABC transporter family protein.
     0.704
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.