STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0281Bacterial regulatory s, tetR family protein. (212 aa)    
Predicted Functional Partners:
B005_1926
Putative cholesterol esterase.
  
     0.637
B005_3334
Putative cholesterol esterase.
  
     0.616
B005_0282
Putative acyl-CoA dehydrogenase.
 
     0.580
B005_3335
Hypothetical protein.
  
     0.554
B005_2996
Diguanylate cyclase domain protein.
  
 
 0.526
B005_2667
Exonuclease SbcCD, C subunit.
  
     0.513
B005_3326
Putative monooxygenase.
  
     0.495
B005_0768
Hydrolase CocE/NonD family protein.
  
     0.483
B005_1927
Putative membrane protein.
  
     0.407
B005_2665
Hypothetical protein.
  
     0.400
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.