STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0287Acetyltransferase family protein. (172 aa)    
Predicted Functional Partners:
B005_0449
lysR substrate binding domain protein.
  
    0.695
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.586
B005_3466
Hypothetical protein.
  
     0.540
B005_3447
Hypothetical protein.
  
     0.521
B005_4057
Terpene synthase family, metal binding domain protein.
  
     0.515
B005_0703
B12 binding domain protein.
  
     0.474
B005_1770
Hypothetical protein.
 
     0.456
B005_1232
Hypothetical protein.
  
     0.454
manA
Mannose-6-phosphate isomerase, class I.
       0.453
B005_4026
Hypothetical protein.
  
   
 0.426
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.