STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0359Hypothetical protein. (258 aa)    
Predicted Functional Partners:
B005_3441
Hypothetical protein.
   
 0.862
B005_2325
Putative peptidase C14 caspase catalytic subunit p20.
    
 0.855
B005_5390
Phosphoribulokinase / Uridine kinase family protein.
   
 0.780
B005_3943
ATP-NAD kinase family protein.
   
 0.737
B005_1310
Protein-tyrosine phosphatase.
   
 0.723
B005_3757
dinB superfamily protein.
    
 0.721
B005_4032
Ankyrin repeat family protein.
    
 0.721
B005_0430
Hypothetical protein.
    
 0.620
B005_4291
Trypsin family protein.
    
 0.620
B005_3647
Channel, hemolysin III family protein.
   
 0.599
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.