STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0374CHAT domain protein. (617 aa)    
Predicted Functional Partners:
B005_0372
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.809
B005_4026
Hypothetical protein.
  
    0.587
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.536
B005_1768
Glycosyl hydrolases 15 family protein.
   
    0.536
B005_0373
Hypothetical protein.
       0.535
B005_1535
Putative membrane protein.
  
     0.476
B005_0430
Hypothetical protein.
 
     0.451
B005_0746
Bacterial regulatory s, luxR family protein.
  
     0.440
B005_5537
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.423
B005_3481
Bacterial extracellular solute-binding family protein.
  
    0.417
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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