STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0401mobA-like NTP transferase domain protein. (244 aa)    
Predicted Functional Partners:
strM
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.751
B005_0400
Tyrosine phosphatase family protein.
   
   0.658
B005_1447
Hypothetical protein.
  
  
 0.653
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.592
B005_1433
degT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.498
ddhC
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.498
B005_4231
Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.498
B005_4232
Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.498
B005_1101
Glycosyl transferases group 1 family protein.
  
 
 0.470
B005_1048
Nucleotide sugar dehydrogenase family protein.
  
  
 0.415
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.