STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0457Phage integrase family protein; Belongs to the 'phage' integrase family. (302 aa)    
Predicted Functional Partners:
B005_3545
ftsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.734
B005_1975
parB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
  
 0.510
B005_3904
ACT domain protein.
  
    0.502
B005_0919
Phosphoribosyl transferase domain protein.
   
    0.497
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.487
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
  
 0.457
B005_3896
NUDIX domain protein.
  
  
 0.442
B005_0873
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.436
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
   
    0.435
B005_0044
Sigma-54 interaction domain protein.
 
     0.420
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.