STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0491Putative membrane protein. (125 aa)    
Predicted Functional Partners:
B005_0492
Rod shape-determining MreC family protein; Involved in formation and maintenance of cell shape.
  
 
 0.973
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
  
 0.913
mrdA
Penicillin-binding protein 2.
  
  
 0.902
B005_0493
Cell shape determining, MreB/Mrl family protein.
  
  
 0.737
B005_0488
Radical SAM superfamily protein.
       0.546
pheT
phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
    0.468
cmk
Cytidylate kinase.
   
  
 0.442
B005_0487
Hypothetical protein.
       0.429
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.