STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0492Rod shape-determining MreC family protein; Involved in formation and maintenance of cell shape. (299 aa)    
Predicted Functional Partners:
B005_0493
Cell shape determining, MreB/Mrl family protein.
 
 
 0.993
B005_0491
Putative membrane protein.
  
 
 0.973
mrdA
Penicillin-binding protein 2.
 
 
 0.959
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
  
 0.905
B005_3546
Helix-turn-helix domain protein.
 
 
 
 0.718
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.657
B005_3790
Penicillin binding transpeptidase domain protein.
 
 
 0.635
B005_1905
Penicillin binding transpeptidase domain protein.
 
 
 0.610
B005_5219
Penicillin binding transpeptidase domain protein.
 
 
 0.594
cmk
Cytidylate kinase.
  
  
 0.566
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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