STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0524Major Facilitator Superfamily protein. (467 aa)    
Predicted Functional Partners:
B005_0523
Hypothetical protein.
       0.768
B005_3477
Hypothetical protein.
  
     0.665
B005_5445
Hypothetical protein.
  
     0.616
malQ
4-alpha-glucanotransferase.
       0.577
B005_2479
marR family protein.
  
     0.567
B005_2992
TQXA domain protein.
  
     0.566
B005_5213
Hypothetical protein.
  
     0.555
B005_1366
CAAX protease self-immunity family protein.
  
     0.538
B005_2667
Exonuclease SbcCD, C subunit.
  
     0.522
B005_2990
Putative dNA polymerase beta domain protein region.
  
     0.515
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.