STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0560Phage integrase family protein; Belongs to the 'phage' integrase family. (497 aa)    
Predicted Functional Partners:
B005_0561
Helix-turn-helix domain protein.
     
 0.811
B005_1692
Type VII secretion integral membrane protein EccD.
  
     0.677
B005_3179
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.539
B005_3489
Hypothetical protein.
  
    0.527
B005_0919
Phosphoribosyl transferase domain protein.
   
    0.497
B005_2752
Short chain dehydrogenase family protein.
  
     0.491
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.487
B005_2903
Putative membrane protein.
  
    0.484
B005_2803
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.473
B005_2750
Poly(glycerophosphate) glycerophosphotransferase family protein.
  
     0.471
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.