STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0588cobW/HypB/UreG, nucleotide-binding domain protein. (367 aa)    
Predicted Functional Partners:
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.884
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.879
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
  
 0.796
cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit.
     
 0.696
B005_2895
Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.662
B005_3390
Periplasmic solute binding family protein.
  
  
 0.662
B005_4681
Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.662
rpmG-3
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.650
rpmG-2
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.638
B005_3811
Prokaryotic dksA/traR C4-type zinc finger family protein.
  
  
 0.632
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.