STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0598Peptidase M48 family protein. (314 aa)    
Predicted Functional Partners:
B005_0597
Transcriptional regulator BlaI.
 
    0.950
B005_1515
Transcriptional regulator BlaI.
 
    0.802
B005_0845
Penicillinase repressor family protein.
 
    0.799
B005_0595
Cytochrome C biogenesis transmembrane region family protein.
 
     0.730
B005_0594
DSBA-like thioredoxin domain protein.
       0.685
B005_0596
PQQ-like domain protein.
       0.679
B005_0599
Hypothetical protein.
       0.553
B005_0593
Putative membrane protein.
       0.549
B005_1525
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
   
 0.515
B005_1521
Bacterial sensory transduction regulator family protein.
  
     0.495
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.