STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0600Hypothetical protein. (149 aa)    
Predicted Functional Partners:
lcdH
NAD binding domain of 6-phosphogluconate dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
   
 0.992
B005_0602
Hypothetical protein.
 
  
 0.935
B005_2047
Short chain dehydrogenase family protein.
  
 
 0.887
B005_3365
Short chain dehydrogenase family protein.
  
 
 0.824
eryA
Erythronolide synthase, modules 3 and 4.
  
 
 0.814
B005_0603
Helix-turn-helix family protein.
 
    0.719
B005_2046
Short chain dehydrogenase family protein.
  
 
 0.643
B005_2044
Amino acid adenylation domain protein.
  
 
 0.582
B005_2045
Acyl transferase domain protein.
  
 
 0.502
B005_0750
Bacterial extracellular solute-binding s, 5 Middle family protein.
  
     0.423
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.