STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0643Redox-sensitive transcriptional activator SoxR. (149 aa)    
Predicted Functional Partners:
B005_4664
merR regulatory family protein.
  
     0.705
B005_2026
merR regulatory family protein.
  
     0.549
B005_0644
DSBA-like thioredoxin domain protein.
       0.534
B005_0645
Zinc-binding dehydrogenase family protein.
       0.534
B005_0642
RNA ligase.
       0.524
B005_5017
merR regulatory family protein.
  
     0.452
B005_2210
merR regulatory family protein.
  
     0.424
B005_0646
Sugar (and other) transporter family protein.
       0.421
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.