STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0696Putative transcriptional regulator, GntR family protein. (235 aa)    
Predicted Functional Partners:
B005_3373
Bacterial regulatory s, gntR family protein.
  
     0.767
B005_0254
Iron dependent repressor, N-terminal DNA binding domain protein.
  
     0.764
B005_4604
Bacterial regulatory s, gntR family protein.
  
     0.762
B005_4359
Bacterial regulatory s, gntR family protein.
  
     0.760
B005_4215
Bacterial regulatory s, gntR family protein.
  
     0.759
B005_4429
Bacterial regulatory s, gntR family protein.
  
     0.757
B005_2064
Bacterial regulatory s, gntR family protein.
  
     0.755
B005_0343
Bacterial regulatory s, gntR family protein.
  
     0.752
B005_3457
Bacterial regulatory s, gntR family protein.
  
     0.748
B005_0793
Bacterial regulatory s, gntR family protein.
  
  
 0.647
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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