B005_0781 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B005_0781

Bacterial regulatory s, luxR family protein. (207 aa)

Predicted Functional Partners:

B005_0780

0.955

B005_1546

0.813

B005_3219

0.803

B005_2454

0.799

B005_1979

0.797

B005_0735

0.796

B005_4815

0.793

B005_0687

0.758

B005_5321

0.745

B005_4688

0.727

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
B005_0687	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.758
B005_0735	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.796
B005_0780	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.955
B005_0781	B005_0687	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.758
B005_0781	B005_0735	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.796
B005_0781	B005_0780	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.955
B005_0781	B005_1546	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.813
B005_0781	B005_1979	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.797
B005_0781	B005_2454	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.799
B005_0781	B005_3219	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.803
B005_0781	B005_4688	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.727
B005_0781	B005_4815	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.793
B005_0781	B005_5321	Bacterial regulatory s, luxR family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.745
B005_1546	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.813
B005_1979	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.797
B005_2454	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.799
B005_3219	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.803
B005_4688	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.727
B005_4688	B005_4815	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	0.769
B005_4815	B005_0781	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.	Bacterial regulatory s, luxR family protein.	0.793