STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0851Malic enzyme, NAD binding domain protein. (396 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase family protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.952
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
 
 
 0.947
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 0.944
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.944
B005_2653
Acceptor oxidoreductase, alpha subunit.
  
 
 0.941
B005_2020
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Belongs to the TPP enzyme family.
  
 
 0.917
B005_5147
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Belongs to the TPP enzyme family.
  
 
 0.917
B005_0198
Transketolase, pyrimidine binding domain protein.
   
 
 0.915
B005_1702
Transketolase, pyrimidine binding domain protein.
   
 
 0.915
B005_1942
Transketolase, pyrimidine binding domain protein.
   
 
 0.915
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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