STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0858Histidine kinase-like ATPase domain protein. (133 aa)    
Predicted Functional Partners:
B005_0859
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily protein.
 
 
 0.943
B005_1015
Hypothetical protein.
  
     0.766
B005_0230
Putative regulator.
  
     0.732
B005_1530
Uncharacterized protein.
  
     0.723
B005_1843
Histidine kinase-like ATPase domain protein.
  
     0.722
B005_3615
Hypothetical protein.
  
     0.697
cofG
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit.
  
    0.679
B005_1817
Hypothetical protein.
  
     0.668
B005_5140
RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.668
B005_0066
Putative DNA binding protein.
  
     0.664
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.