STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0875F5/8 type C domain protein. (1451 aa)    
Predicted Functional Partners:
B005_0874
Hypothetical protein.
 
   
 0.953
B005_0878
Putative membrane protein.
 
   
 0.945
B005_3130
ubiE/COQ5 methyltransferase family protein.
  
 0.867
B005_0876
Glycosyl transferases group 1 family protein.
 
   
 0.866
B005_3135
Hypothetical protein.
 
   
 0.806
B005_3134
Acyltransferase family protein.
 
   
 0.746
B005_0774
Hypothetical protein.
  
     0.690
B005_3133
Putative membrane protein.
 
     0.685
B005_2780
N-acetylmuramoyl-L-alanine amidase family protein.
  
     0.674
B005_3365
Short chain dehydrogenase family protein.
     
 0.620
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.