STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0887Putative periplasmic substrate-binding protein. (250 aa)    
Predicted Functional Partners:
B005_0886
Hypothetical protein.
       0.778
B005_0885
Polyketide cyclase / dehydrase and lipid transport family protein.
       0.613
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
      0.559
B005_2057
crotonyl-CoA reductase.
  
     0.525
B005_4206
fecCD transport family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.520
B005_5468
fecCD transport family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.516
B005_4627
fecCD transport family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.511
B005_5156
fecCD transport family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.511
B005_3934
fecCD transport family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.508
B005_3932
ABC transporter family protein.
  
 
 0.465
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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