STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0890Major Facilitator Superfamily protein. (400 aa)    
Predicted Functional Partners:
B005_0891
Bacterial regulatory, arsR family protein.
 
     0.820
B005_0066
Putative DNA binding protein.
  
     0.477
B005_0888
Hypothetical protein.
       0.472
B005_0889
Transcriptional regulator PadR-like family protein.
       0.472
B005_3899
Hypothetical protein.
  
     0.470
B005_2803
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.457
B005_0179
Major Facilitator Superfamily protein.
  
     0.453
B005_5054
Acetyltransferase family protein.
   
    0.428
B005_4954
Helix-turn-helix family protein.
  
     0.423
B005_0105
yacP-like NYN domain protein.
  
     0.402
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.