STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cofEGamma-glutamyl ligase. (431 aa)    
Predicted Functional Partners:
cofD
FO 2-phospho-L-lactate transferase.
 
 
 0.999
cofC
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.939
cofG
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit.
 
   
 0.815
B005_5399
Putative F420-dependent oxidoreductase.
 
  
 0.772
B005_0166
Putative F420-dependent oxidoreductase family protein.
 
  
 0.762
B005_5053
Putative nitroreductase.
 
   
 0.729
B005_5081
F420-dependent oxidoreductase, G6PDH family protein.
 
  
 0.710
B005_5138
F420-dependent oxidoreductase, G6PDH family protein.
 
  
 0.680
B005_2765
Luciferase-like monooxygenase family protein.
 
  
 0.668
B005_0674
Putative F420-dependent oxidoreductase family protein.
 
  
 0.574
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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