STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0992ABC transporter family protein; Belongs to the ABC transporter superfamily. (351 aa)    
Predicted Functional Partners:
phnU
2-aminoethylphosphonate ABC transporter, permease protein.
 
 0.996
B005_0990
Binding--dependent transport system inner membrane component family protein.
 
 
 0.994
B005_0989
Bacterial extracellular solute-binding family protein.
 
 
 0.981
B005_0994
FAD binding domain protein.
 
  
 0.834
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 0.827
B005_0993
Haloacid dehalogenase-like hydrolase family protein.
 
     0.805
B005_5112
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
  
 0.729
B005_5114
Bacterial extracellular solute-binding family protein.
 
  
 0.511
phnF
HTH-type transcriptional repressor phnF.
   
   0.501
B005_0988
Peptidase M20/M25/M40 family protein.
       0.489
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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