phnF protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

phnF

HTH-type transcriptional repressor phnF. (259 aa)

Predicted Functional Partners:

B005_5366

0.741

B005_2878

0.724

B005_2031

0.718

B005_0994

0.642

B005_0993

0.629

B005_2879

0.591

B005_0996

0.564

B005_0990

0.560

B005_0989

0.555

phnU

0.547

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B005_0989	B005_0990	B005_0989	B005_0990	Bacterial extracellular solute-binding family protein.	Binding--dependent transport system inner membrane component family protein.	0.987
B005_0989	B005_0993	B005_0989	B005_0993	Bacterial extracellular solute-binding family protein.	Haloacid dehalogenase-like hydrolase family protein.	0.828
B005_0989	B005_0994	B005_0989	B005_0994	Bacterial extracellular solute-binding family protein.	FAD binding domain protein.	0.914
B005_0989	phnF	B005_0989	B005_0995	Bacterial extracellular solute-binding family protein.	HTH-type transcriptional repressor phnF.	0.555
B005_0989	phnU	B005_0989	B005_0991	Bacterial extracellular solute-binding family protein.	2-aminoethylphosphonate ABC transporter, permease protein.	0.993
B005_0990	B005_0989	B005_0990	B005_0989	Binding--dependent transport system inner membrane component family protein.	Bacterial extracellular solute-binding family protein.	0.987
B005_0990	B005_0993	B005_0990	B005_0993	Binding--dependent transport system inner membrane component family protein.	Haloacid dehalogenase-like hydrolase family protein.	0.822
B005_0990	B005_0994	B005_0990	B005_0994	Binding--dependent transport system inner membrane component family protein.	FAD binding domain protein.	0.877
B005_0990	phnF	B005_0990	B005_0995	Binding--dependent transport system inner membrane component family protein.	HTH-type transcriptional repressor phnF.	0.560
B005_0990	phnU	B005_0990	B005_0991	Binding--dependent transport system inner membrane component family protein.	2-aminoethylphosphonate ABC transporter, permease protein.	0.990
B005_0993	B005_0989	B005_0993	B005_0989	Haloacid dehalogenase-like hydrolase family protein.	Bacterial extracellular solute-binding family protein.	0.828
B005_0993	B005_0990	B005_0993	B005_0990	Haloacid dehalogenase-like hydrolase family protein.	Binding--dependent transport system inner membrane component family protein.	0.822
B005_0993	B005_0994	B005_0993	B005_0994	Haloacid dehalogenase-like hydrolase family protein.	FAD binding domain protein.	0.945
B005_0993	phnF	B005_0993	B005_0995	Haloacid dehalogenase-like hydrolase family protein.	HTH-type transcriptional repressor phnF.	0.629
B005_0993	phnU	B005_0993	B005_0991	Haloacid dehalogenase-like hydrolase family protein.	2-aminoethylphosphonate ABC transporter, permease protein.	0.809
B005_0994	B005_0989	B005_0994	B005_0989	FAD binding domain protein.	Bacterial extracellular solute-binding family protein.	0.914
B005_0994	B005_0990	B005_0994	B005_0990	FAD binding domain protein.	Binding--dependent transport system inner membrane component family protein.	0.877
B005_0994	B005_0993	B005_0994	B005_0993	FAD binding domain protein.	Haloacid dehalogenase-like hydrolase family protein.	0.945
B005_0994	phnF	B005_0994	B005_0995	FAD binding domain protein.	HTH-type transcriptional repressor phnF.	0.642
B005_0994	phnU	B005_0994	B005_0991	FAD binding domain protein.	2-aminoethylphosphonate ABC transporter, permease protein.	0.873