STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0999uvrD/REP helicase N-terminal domain protein; Overlaps another CDS with the same product name; Belongs to the helicase family. UvrD subfamily. (1143 aa)    
Predicted Functional Partners:
pcrA
ATP-dependent DNA helicase PcrA.
  
  
0.924
B005_0986
uvrD/REP helicase N-terminal domain protein.
  
  
0.923
B005_4136
uvrD/REP helicase N-terminal domain protein.
    
 0.903
B005_1000
uvrD/REP helicase N-terminal domain protein; Overlaps another CDS with the same product name; Belongs to the helicase family. UvrD subfamily.
 
 
  
0.890
priA
Putative primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
  
 0.712
B005_1001
6-O-methylguanine DNA methyltransferase, DNA binding domain protein.
 
     0.648
B005_4685
Exonuclease family protein.
  
  
 0.634
B005_0103
Exonuclease, DNA polymerase III, epsilon subunit family domain protein.
 
  
 0.620
B005_0381
ATP-dependent DNA helicase, RecQ family protein.
  
 
 0.612
B005_1965
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.608
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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