STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1064Putative sigma E regulatory protein, MucB/RseB. (337 aa)    
Predicted Functional Partners:
B005_0944
Hypothetical protein.
  
     0.766
B005_4084
TPR repeat family protein.
  
     0.753
B005_1119
Hypothetical protein.
  
     0.745
B005_2976
Hypothetical protein.
  
     0.739
B005_3265
rNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.720
B005_3857
Hypothetical protein.
  
     0.717
B005_3789
Putative membrane protein.
  
     0.706
B005_3046
Cellulose binding domain protein.
  
     0.703
B005_0086
Hypothetical protein.
  
     0.701
B005_4517
Putative membrane protein.
  
     0.701
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.