STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxAFerredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (106 aa)    
Predicted Functional Partners:
B005_2653
Acceptor oxidoreductase, alpha subunit.
  
 
 0.889
dapC
Succinyldiaminopimelate transaminase.
    
 0.852
cysC
Sulfate adenylyltransferase, adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.751
B005_0298
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.636
sdhA
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 
 0.636
B005_4360
FAD binding domain protein.
  
 
 0.636
B005_1081
Hypothetical protein.
       0.562
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.478
B005_1078
Hypothetical protein.
       0.458
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.