STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1110acyl-CoA carboxylase epsilon subunit. (74 aa)    
Predicted Functional Partners:
B005_1109
Putative propionyl-CoA carboxylase beta chain 5.
  
 
 0.984
B005_1111
Carbamoyl-phosphate synthase L chain, ATP binding domain protein.
     
 0.715
B005_1106
biotin--[acetyl-CoA-carboxylase] ligase.
     
 0.667
B005_2034
Hypothetical protein.
  
     0.621
B005_1108
Hypothetical protein.
       0.610
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.536
B005_3893
Acetyltransferase family protein.
  
     0.510
mce
methylmalonyl-CoA epimerase.
     
  0.499
B005_1107
Phosphoenolpyruvate carboxylase family protein; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
       0.478
B005_1127
Hypothetical protein.
  
     0.444
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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