STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1123Virulence factor BrkB family protein. (370 aa)    
Predicted Functional Partners:
B005_0933
merR HTH regulatory family protein.
  
 
   0.642
B005_1124
GHMP kinase family protein; Belongs to the GHMP kinase family.
 
     0.619
B005_2550
Hypothetical protein.
  
    0.553
B005_1122
Carboxylate-amine ligase, YbdK family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.470
B005_2803
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
    0.465
B005_1896
Sensory box protein.
 
     0.462
B005_1121
Amidohydrolase family protein.
  
    0.449
B005_1981
Hypothetical protein.
  
     0.435
B005_4578
Amidinotransferase family protein.
  
    0.403
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.