STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1126Isocitrate dehydrogenase, NADP-dependent; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (405 aa)    
Predicted Functional Partners:
sucA
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
  
 
 0.989
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.981
B005_4766
glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.965
B005_3860
GXGXG motif family protein.
    
 0.956
B005_2653
Acceptor oxidoreductase, alpha subunit.
  
 
 0.950
B005_2652
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
     
 0.914
mdh
Malate dehydrogenase family protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.893
gltA
Citrate (Si)-synthase; Belongs to the citrate synthase family.
  
 
 0.873
B005_2677
Aminotransferase class-V family protein.
   
 0.837
B005_3498
Aminotransferase class I and II family protein.
   
 0.837
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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