STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1136Sulfotransferase domain protein. (291 aa)    
Predicted Functional Partners:
B005_1137
Polysaccharide biosynthesis family protein.
 
     0.953
B005_1134
O-antigen ligase like membrane family protein.
 
    0.907
B005_1135
Putative aminoglycoside phosphotransferase.
 
     0.866
B005_1139
Glycosyl transferase 2 family protein.
 
   0.856
B005_2600
Hypothetical protein.
 
    0.792
B005_1133
Chain length determinant family protein.
 
     0.790
B005_1142
Sulfotransferase domain protein.
  
   
 0.721
B005_1138
Oligosaccharide biosynthesis Alg14 like family protein.
 
     0.710
B005_2325
Putative peptidase C14 caspase catalytic subunit p20.
  
 0.694
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.690
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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