STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1137Polysaccharide biosynthesis family protein. (501 aa)    
Predicted Functional Partners:
B005_1134
O-antigen ligase like membrane family protein.
 
  
 0.959
B005_1136
Sulfotransferase domain protein.
 
     0.953
B005_1139
Glycosyl transferase 2 family protein.
 
  
 0.938
B005_1135
Putative aminoglycoside phosphotransferase.
 
     0.900
B005_1133
Chain length determinant family protein.
  
 0.874
B005_1048
Nucleotide sugar dehydrogenase family protein.
  
  
 0.837
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.826
strM
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.823
B005_2600
Hypothetical protein.
 
    0.823
B005_1447
Hypothetical protein.
  
  
 0.811
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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