STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1209ROK family protein. (410 aa)    
Predicted Functional Partners:
B005_1214
Periplasmic binding domain protein.
 
  
 0.790
B005_1210
Oxidoreductase, NAD-binding Rossmann fold family protein.
 
   
 0.726
B005_1215
Xylose isomerase-like TIM barrel family protein.
 
   
 0.697
B005_1213
Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
    0.680
B005_1212
Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
    0.659
B005_1211
ABC transporter family protein.
     
 0.557
B005_0910
PTS system, glucose-like IIB component domain protein.
  
 
 0.535
B005_0911
Phosphotransferase system, EIIC family protein.
  
 
 0.535
B005_1225
Putative DNA-binding protein.
 
   
 0.444
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.