STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1213Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family. (348 aa)    
Predicted Functional Partners:
B005_1211
ABC transporter family protein.
 0.995
B005_1214
Periplasmic binding domain protein.
 
 0.995
B005_1212
Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.983
rbsA
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.980
B005_0258
Periplasmic sugar-binding domain protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.971
B005_1215
Xylose isomerase-like TIM barrel family protein.
 
    0.946
B005_1210
Oxidoreductase, NAD-binding Rossmann fold family protein.
 
    0.877
B005_1209
ROK family protein.
 
    0.680
B005_1216
Carbohydrate binding module family protein.
 
     0.538
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.526
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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