B005_1215 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B005_1215

Xylose isomerase-like TIM barrel family protein. (286 aa)

Predicted Functional Partners:

B005_1214

0.954

B005_1213

0.946

B005_1212

0.941

B005_1210

0.933

B005_1211

0.894

B005_1216

0.792

B005_1209

0.697

B005_1219

0.676

B005_1222

0.665

B005_1224

0.646

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
B005_1209	B005_1210	ROK family protein.	Oxidoreductase, NAD-binding Rossmann fold family protein.	0.726
B005_1209	B005_1211	ROK family protein.	ABC transporter family protein.	0.557
B005_1209	B005_1212	ROK family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.659
B005_1209	B005_1213	ROK family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.680
B005_1209	B005_1214	ROK family protein.	Periplasmic binding domain protein.	0.790
B005_1209	B005_1215	ROK family protein.	Xylose isomerase-like TIM barrel family protein.	0.697
B005_1210	B005_1209	Oxidoreductase, NAD-binding Rossmann fold family protein.	ROK family protein.	0.726
B005_1210	B005_1211	Oxidoreductase, NAD-binding Rossmann fold family protein.	ABC transporter family protein.	0.843
B005_1210	B005_1212	Oxidoreductase, NAD-binding Rossmann fold family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.860
B005_1210	B005_1213	Oxidoreductase, NAD-binding Rossmann fold family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.877
B005_1210	B005_1214	Oxidoreductase, NAD-binding Rossmann fold family protein.	Periplasmic binding domain protein.	0.874
B005_1210	B005_1215	Oxidoreductase, NAD-binding Rossmann fold family protein.	Xylose isomerase-like TIM barrel family protein.	0.933
B005_1210	B005_1216	Oxidoreductase, NAD-binding Rossmann fold family protein.	Carbohydrate binding module family protein.	0.552
B005_1211	B005_1209	ABC transporter family protein.	ROK family protein.	0.557
B005_1211	B005_1210	ABC transporter family protein.	Oxidoreductase, NAD-binding Rossmann fold family protein.	0.843
B005_1211	B005_1212	ABC transporter family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.996
B005_1211	B005_1213	ABC transporter family protein.	Branched-chain amino acid transport system / permease component family protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.	0.995
B005_1211	B005_1214	ABC transporter family protein.	Periplasmic binding domain protein.	0.993
B005_1211	B005_1215	ABC transporter family protein.	Xylose isomerase-like TIM barrel family protein.	0.894
B005_1211	B005_1216	ABC transporter family protein.	Carbohydrate binding module family protein.	0.464