STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1222tatD related DNase family protein. (289 aa)    
Predicted Functional Partners:
B005_1219
ubiA prenyltransferase family protein.
 
   
 0.957
B005_1221
Putative sugar phosphate isomerase/epimerase.
 
  
 0.957
B005_1223
Xylose isomerase-like TIM barrel family protein.
 
  
 0.957
B005_1220
Xylose isomerase-like TIM barrel family protein.
 
  
 0.955
B005_1218
Myo-inositol-1-phosphate synthase.
 
     0.948
B005_1224
Type I phosphodiesterase / nucleotide pyrophosphatase family protein.
 
   
 0.940
B005_1216
Carbohydrate binding module family protein.
 
   
 0.916
B005_1217
Hypothetical protein.
       0.686
B005_1215
Xylose isomerase-like TIM barrel family protein.
 
  
 0.665
B005_1225
Putative DNA-binding protein.
  
  
 0.660
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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