STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1236Hypothetical protein. (467 aa)    
Predicted Functional Partners:
B005_0381
ATP-dependent DNA helicase, RecQ family protein.
  
 0.851
B005_2249
Type VII secretion integral membrane protein EccD.
 
     0.785
B005_2247
Hypothetical protein.
 
     0.780
B005_2246
Hypothetical protein.
 
     0.773
B005_2242
Hypothetical protein.
 
     0.760
B005_2248
Hypothetical protein.
 
    0.754
B005_5547
RAMP superfamily protein.
 
 
   0.746
B005_1141
Glycosyl hydrolase 26 family protein; Belongs to the glycosyl hydrolase 26 family.
  
     0.743
B005_1878
Putative membrane protein.
  
     0.741
B005_5394
Hypothetical protein.
  
     0.732
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.