STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1247Bacterial regulatory s, gntR family protein. (518 aa)    
Predicted Functional Partners:
B005_3239
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.536
B005_4700
Iron dependent repressor, N-terminal DNA binding domain protein.
   
    0.535
argP
Transcriptional regulator, ArgP family protein; Belongs to the LysR transcriptional regulatory family.
   
    0.517
B005_3639
Ferric uptake regulator family protein; Belongs to the Fur family.
   
  
 0.517
B005_4798
Bacterial regulatory helix-turn-helix s, AraC family protein.
   
    0.509
B005_1246
Hydrolase, TatD family protein.
       0.473
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.