STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1343Ribosomal L11 methyltransferase family protein; Belongs to the methyltransferase superfamily. (498 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.794
B005_0377
Hypothetical protein.
  
     0.636
B005_1342
Hypothetical protein.
       0.623
B005_3774
Hypothetical protein.
 
     0.598
B005_1344
MOSC domain protein.
  
    0.590
B005_4692
Hypothetical protein.
    
 0.579
B005_1114
Putative cheA signal transduction histidine kinase.
  
     0.511
B005_3243
DEAD/DEAH box helicase family protein.
 
 
   0.511
B005_0495
Hypothetical protein.
  
     0.476
B005_1077
Hypothetical protein.
 
     0.451
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.