STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1447Hypothetical protein. (299 aa)    
Predicted Functional Partners:
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.999
strM
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.986
B005_1265
mobA-like NTP transferase domain protein.
 
 
0.928
B005_1437
Nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.918
B005_1048
Nucleotide sugar dehydrogenase family protein.
 
  
 0.887
B005_4079
Bacterial transferase hexapeptide family protein.
  
  
0.822
B005_1137
Polysaccharide biosynthesis family protein.
  
  
 0.811
B005_1438
Polysaccharide biosynthesis family protein.
 
  
 0.709
B005_1101
Glycosyl transferases group 1 family protein.
  
  
 0.681
B005_0401
mobA-like NTP transferase domain protein.
  
  
 0.653
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.