STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1464Sugar 3-ketoreductase. (329 aa)    
Predicted Functional Partners:
ddhC
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.941
B005_1433
degT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.939
B005_1432
NDP-hexose 2,3-dehydratase family protein.
 
  
 0.926
B005_1465
Hypothetical protein.
       0.773
B005_1466
Hypothetical protein.
       0.773
B005_2270
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.597
B005_1467
Hypothetical protein.
       0.561
lysS
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.529
B005_5105
pfkB carbohydrate kinase family protein.
 
  
 0.529
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.505
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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