STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1644FMN-dependent dehydrogenase family protein. (421 aa)    
Predicted Functional Partners:
B005_1645
tRNA synthetases class II family protein.
 
  
 0.923
B005_3860
GXGXG motif family protein.
  
 
0.913
B005_1646
Methylaspartate mutase E chain family protein.
 
     0.799
B005_2016
Flavin oxidoreductase / NADH oxidase family protein.
  
 
 0.792
B005_1647
B12 binding domain protein.
 
     0.790
gltD
Glutamate synthase, NADH/NADPH, small subunit domain protein.
  
 
 0.771
B005_5217
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.771
B005_5385
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.771
B005_1648
Helix-turn-helix family protein.
 
     0.698
B005_4766
glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.685
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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