STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1702Transketolase, pyrimidine binding domain protein. (326 aa)    
Predicted Functional Partners:
B005_0199
Transketolase, thiamine diphosphate binding domain protein.
 0.999
B005_1703
Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit.
 0.999
B005_1943
Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit.
 0.999
pdhA
Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.999
B005_1701
2-oxoacid dehydrogenases acyltransferase family protein.
 0.992
B005_0129
Dihydrolipoyl dehydrogenase.
 
 0.984
B005_1773
Dihydrolipoyl dehydrogenase.
 
 0.982
B005_1941
E3 binding domain protein.
 
 0.978
sucA
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
  
 0.975
B005_2061
2-oxoacid dehydrogenases acyltransferase family protein.
 0.975
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.