STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1730Substrate binding domain of ABC-type glycine betaine transport system family protein. (323 aa)    
Predicted Functional Partners:
B005_1732
Glycine betaine/L-proline transport ATP binding subunit.
 
 0.997
choW
Choline ABC transporter, permease protein.
 
 
 0.995
B005_2301
Glycine betaine/L-proline transport ATP binding subunit.
 
 0.990
B005_2302
Binding--dependent transport system inner membrane component family protein.
 
 
 0.980
B005_2306
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
  
  0.970
B005_2303
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
  
 
0.928
codA
Choline oxidase.
 
   
 0.857
B005_1734
Hypothetical protein.
       0.554
B005_1729
endonuclease/Exonuclease/phosphatase family protein.
       0.486
B005_1728
Helix-turn-helix family protein.
 
     0.438
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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