STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1732Glycine betaine/L-proline transport ATP binding subunit. (388 aa)    
Predicted Functional Partners:
choW
Choline ABC transporter, permease protein.
 0.998
B005_1730
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.997
B005_2302
Binding--dependent transport system inner membrane component family protein.
 0.991
B005_2303
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.990
B005_2306
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.990
B005_2301
Glycine betaine/L-proline transport ATP binding subunit.
  
  
 
0.904
codA
Choline oxidase.
     
 0.808
B005_3272
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
  
 0.625
B005_0509
ABC transporter family protein.
 
     
0.621
B005_3271
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
  
 0.591
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.