STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1777Short chain dehydrogenase family protein. (262 aa)    
Predicted Functional Partners:
B005_1776
Bacterial regulatory s, tetR family protein.
 
     0.686
B005_1766
Short chain dehydrogenase family protein.
  
 
 0.549
B005_2045
Acyl transferase domain protein.
 
 0.481
B005_2931
Hypothetical protein.
   
 
 0.479
B005_3365
Short chain dehydrogenase family protein.
  
 
 0.472
eryA
Erythronolide synthase, modules 3 and 4.
  
 
 0.469
B005_2044
Amino acid adenylation domain protein.
  
 
 0.453
B005_0615
Beta-ketoacyl synthase, C-terminal domain protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.448
B005_0616
Actinorhodin polyketide putative beta-ketoacyl synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.443
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.441
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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