STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_1856Penicillin binding transpeptidase domain protein. (786 aa)    
Predicted Functional Partners:
B005_1905
Penicillin binding transpeptidase domain protein.
 
 
 
 0.759
mltG
yceG-like family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.731
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.710
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.694
B005_3806
divIVA domain protein.
 
 
 
 0.617
B005_1904
Cell cycle family protein; Belongs to the SEDS family.
  
 
 
 0.593
B005_2857
Cell cycle family protein; Belongs to the SEDS family.
  
 
 
 0.578
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.578
B005_1855
Hypothetical protein.
       0.572
B005_3148
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
   
 
 0.561
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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