paaN protein (Nocardiopsis alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

paaN

Phenylacetic acid degradation protein paaN. (677 aa)

Predicted Functional Partners:

B005_5186

0.946

B005_5181

0.887

B005_5184

0.880

B005_5182

0.871

eryA

0.859

B005_5183

0.846

B005_5185

0.843

B005_3365

0.812

B005_2044

0.799

paaD

0.781

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B005_2044	B005_3365	B005_2044	B005_3365	Amino acid adenylation domain protein.	Short chain dehydrogenase family protein.	0.997
B005_2044	B005_5186	B005_2044	B005_5186	Amino acid adenylation domain protein.	Putative enoyl-CoA hydratase.	0.440
B005_2044	eryA	B005_2044	B005_3363	Amino acid adenylation domain protein.	Erythronolide synthase, modules 3 and 4.	0.995
B005_2044	paaN	B005_2044	B005_1939	Amino acid adenylation domain protein.	Phenylacetic acid degradation protein paaN.	0.799
B005_3365	B005_2044	B005_3365	B005_2044	Short chain dehydrogenase family protein.	Amino acid adenylation domain protein.	0.997
B005_3365	B005_5181	B005_3365	B005_5181	Short chain dehydrogenase family protein.	2Fe-2S iron-sulfur cluster binding domain protein.	0.493
B005_3365	B005_5186	B005_3365	B005_5186	Short chain dehydrogenase family protein.	Putative enoyl-CoA hydratase.	0.430
B005_3365	eryA	B005_3365	B005_3363	Short chain dehydrogenase family protein.	Erythronolide synthase, modules 3 and 4.	0.990
B005_3365	paaN	B005_3365	B005_1939	Short chain dehydrogenase family protein.	Phenylacetic acid degradation protein paaN.	0.812
B005_5181	B005_3365	B005_5181	B005_3365	2Fe-2S iron-sulfur cluster binding domain protein.	Short chain dehydrogenase family protein.	0.493
B005_5181	B005_5182	B005_5181	B005_5182	2Fe-2S iron-sulfur cluster binding domain protein.	phenylacetate-CoA oxygenase, PaaJ subunit.	0.996
B005_5181	B005_5183	B005_5181	B005_5183	2Fe-2S iron-sulfur cluster binding domain protein.	Phenylacetic acid catabolic family protein.	0.996
B005_5181	B005_5184	B005_5181	B005_5184	2Fe-2S iron-sulfur cluster binding domain protein.	Phenylacetic acid degradation B.	0.996
B005_5181	B005_5185	B005_5181	B005_5185	2Fe-2S iron-sulfur cluster binding domain protein.	Phenylacetic acid catabolic family protein.	0.995
B005_5181	B005_5186	B005_5181	B005_5186	2Fe-2S iron-sulfur cluster binding domain protein.	Putative enoyl-CoA hydratase.	0.958
B005_5181	eryA	B005_5181	B005_3363	2Fe-2S iron-sulfur cluster binding domain protein.	Erythronolide synthase, modules 3 and 4.	0.568
B005_5181	paaD	B005_5181	B005_5180	2Fe-2S iron-sulfur cluster binding domain protein.	Phenylacetic acid degradation protein PaaD.	0.989
B005_5181	paaN	B005_5181	B005_1939	2Fe-2S iron-sulfur cluster binding domain protein.	Phenylacetic acid degradation protein paaN.	0.887
B005_5182	B005_5181	B005_5182	B005_5181	phenylacetate-CoA oxygenase, PaaJ subunit.	2Fe-2S iron-sulfur cluster binding domain protein.	0.996
B005_5182	B005_5183	B005_5182	B005_5183	phenylacetate-CoA oxygenase, PaaJ subunit.	Phenylacetic acid catabolic family protein.	0.996